Curator
Meeting
October 27-28, 2003
Milwaukee, WI
Monday, October 27
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8:15 |
Shuttle
Bus departs Radisson for MCW |
|
|
8:30-9:00 |
Breakfast |
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|
9:00-9:15 |
Introduction |
Howard Jacob, HMGC |
|
9:15-9:45 |
Participant
Introductions |
|
|
9:45-10:35 |
Overview ¼ Curation of the EcoCyc Database: The EcoCyc Update
Project ¼ An Overview of Eukaryotic Annotation at TIGR |
Martha Arnaud, EcoCyc Roger Smith, TIGR |
|
10:35-10:55 |
Break |
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|
10:55-12:35 |
¼ Organization and presentation of biological
information in the Saccharomyces Genome
Database ¼ GeneDB: A Prokaryotic and Eukaryotic Genome Resource ¼ RegulonDB: Curation, Literature Search, Notation and
Evidences about Transcriptional Regulation and Transcription Unit
Organization in E.coli K-12 ¼ Integration of New Data into RGD: Quality Control
and Data Submission Tools |
Maria Costanzo, SGD
Christiane Hertz-Fowler, GeneDB Socorro Gama Castro,
Regulon Dean Pasko |
|
12:35-1:35 |
Lunch |
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|
1:35-3:15 |
Mapping curation ¼ Comparative Map Curation in Gramene Using Cmap ¼ Map Curation on GrainGenes Sequence curation ¼ Sequence Curation in dictyBase ¼ Apollo: a genome annotation tool |
Immanuel V. Yap, Gramene Victoria Carollo,
GrainGenes Petra Fey, dictyBase Lynn Crosby, FlyBase |
|
3:15-3:35 |
Break |
|
|
3:35-5:15 |
Informatic aspects
of curation ¼ Clustering MeSH Representations of Medical
Literature ¼ Textpresso: An Information Retrieval and Extraction
System for C. elegans Literature ¼ PubFetch: Collecting literature from multiple data
sources ¼ BioCreAtIvE: Critical Assessment of Information
Extraction |
Craig Struble, Marquette
U. Wen Chen, Wormbase Vijay Narayanasamy, GMOD Marc Colosimo, Mitre |
|
5:30 |
Shuttle
bus departs MCW for Radisson |
|
|
6:15 |
Meet in
Radisson Lobby to Carpool to dinner |
|
Tuesday, October 28
|
8:15 |
Shuttle Bus
departs Radisson for MCW |
|
|
8:30-9:00 |
Breakfast |
|
|
9:00-10:15 |
Curation of
specialized data ¼ Curatorial procedures at Mouse Genome Informatics,
with an emphasis on expression data ¼ Gene Expression Curation in WormBase ¼ Biological Interaction Curation In FlyBase |
Connie Smith, MGI Wen Chen, Wormbase Chihiro Yamada, FlyBase |
|
10:15-10:35 |
Break |
|
|
10:35-12:15 |
¼ Mutant Manifests: toward a zebrafish phenotype
ontology Community input ¼ Community Curation at MaizeGDB ¼ Community Interactions: Feedback, Support and
Curation General discussion |
David S. Fashena, Zfin Carolyn Lawrence, MaizeDB Eva Huala, TAIR |
|
12:15-1:15 |
Lunch |
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|
1:15-2:15 |
Wrap-up, Future
Meetings |
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